Using deep Gaussian processes with GPflux for Bayesian optimization.

import numpy as np
import tensorflow as tf

np.random.seed(1794)
tf.random.set_seed(1794)

Describe the problem

In this notebook, we show how to use deep Gaussian processes (DGPs) for Bayesian optimization using Trieste and GPflux. DGPs may be better for modeling non-stationary objective functions than standard GP surrogates, as discussed in [DKvdH+17, HBB+19].

In this example, we look to find the minimum value of the two- and five-dimensional Michalewicz functions over the hypercubes \([0, pi]^2\)/\([0, pi]^5\). We compare a two-layer DGP model with GPR, using Thompson sampling for both.

The Michalewicz functions are highly non-stationary and have a global minimum that’s hard to find, so DGPs might be more suitable than standard GPs, which may struggle because they typically have stationary kernels that cannot easily model non-stationarities.

import gpflow
from trieste.objectives import Michalewicz2, Michalewicz5
from trieste.objectives.utils import mk_observer
from trieste.experimental.plotting import plot_function_plotly

function = Michalewicz2.objective
F_MINIMIZER = Michalewicz2.minimum

search_space = Michalewicz2.search_space

fig = plot_function_plotly(function, search_space.lower, search_space.upper)
fig.update_layout(height=800, width=800)
fig.show()

Sample the observer over the search space

We set up the observer as usual, using Sobol sampling to sample the initial points.

import trieste

observer = mk_observer(function)

num_initial_points = 20
num_steps = 20
initial_query_points = search_space.sample_sobol(num_initial_points)
initial_data = observer(initial_query_points)

Model the objective function

The Bayesian optimization procedure estimates the next best points to query by using a probabilistic model of the objective. We’ll use a two layer deep Gaussian process (DGP), built using GPflux. We also compare to a (shallow) GP.

Since DGPs can be hard to build, Trieste provides some basic architectures: here we use the build_vanilla_deep_gp function which returns a GPflux model of DeepGP class. As with other models (e.g. GPflow), we cannot use it directly in Bayesian optimization routines, we need to pass it through an appropriate wrapper, DeepGaussianProcess wrapper in this case. Additionally, since the GPflux interface does not currently support copying DGP architectures, if we wish to have the Bayesian optimizer track the model state, we need to pass in the DGP as a callable closure so that the architecture can be recreated when required (alternatively, we can set set_state=False on the optimize call).

A few other useful notes regarding building a DGP model: The DGP model requires us to specify the number of inducing points, as we don’t have the true posterior. To train the model we have to use a stochastic optimizer; Adam is used by default, but we can use other stochastic optimizers from TensorFlow. GPflux allows us to use the Keras fit method, which makes optimizing a lot easier - this method is used in the background for training the model.

from functools import partial

from trieste.models.gpflux import DeepGaussianProcess, build_vanilla_deep_gp


def build_dgp_model(data, search_space):
    dgp = partial(
        build_vanilla_deep_gp,
        data,
        search_space,
        2,
        100,
        likelihood_variance=1e-5,
        trainable_likelihood=False,
    )
    return DeepGaussianProcess(dgp)


dgp_model = build_dgp_model(initial_data, search_space)

WARNING:tensorflow:From /opt/hostedtoolcache/Python/3.7.15/x64/lib/python3.7/site-packages/tensorflow_probability/python/distributions/distribution.py:298: calling MultivariateNormalDiag.__init__ (from tensorflow_probability.python.distributions.mvn_diag) with scale_identity_multiplier is deprecated and will be removed after 2020-01-01.
Instructions for updating:
`scale_identity_multiplier` is deprecated; please combine it with `scale_diag` directly instead.
WARNING:tensorflow:From /opt/hostedtoolcache/Python/3.7.15/x64/lib/python3.7/site-packages/tensorflow/python/ops/linalg/linear_operator_diag.py:175: calling LinearOperator.__init__ (from tensorflow.python.ops.linalg.linear_operator) with graph_parents is deprecated and will be removed in a future version.
Instructions for updating:
Do not pass `graph_parents`.  They will  no longer be used.

Run the optimization loop

We can now run the Bayesian optimization loop by defining a BayesianOptimizer and calling its optimize method.

The optimizer uses an acquisition rule to choose where in the search space to try on each optimization step. We’ll start by using Thompson sampling.

We’ll run the optimizer for twenty steps. Note: this may take a while!

from trieste.acquisition.rule import DiscreteThompsonSampling

bo = trieste.bayesian_optimizer.BayesianOptimizer(observer, search_space)
grid_size = 1000
acquisition_rule = DiscreteThompsonSampling(grid_size, 1)

dgp_result = bo.optimize(
    num_steps,
    initial_data,
    dgp_model,
    acquisition_rule=acquisition_rule,
)
dgp_dataset = dgp_result.try_get_final_dataset()

WARNING:tensorflow:5 out of the last 5 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f83256a70> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:6 out of the last 6 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f81ed6200> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:7 out of the last 7 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f81b0ab00> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:8 out of the last 8 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f81758290> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:9 out of the last 9 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f813e39e0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:10 out of the last 10 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f81dc2170> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f80e898c0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f80adc320> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f80703b90> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f802cbef0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7fff17a0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7fda5e60> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f80649dd0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7f81c320> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7f4aad40> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7f0955f0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
Optimization completed without errors

Explore the results

We can now get the best point found by the optimizer. Note this isn’t necessarily the point that was last evaluated.

dgp_query_points = dgp_dataset.query_points.numpy()
dgp_observations = dgp_dataset.observations.numpy()

dgp_arg_min_idx = tf.squeeze(tf.argmin(dgp_observations, axis=0))

print(f"query point: {dgp_query_points[dgp_arg_min_idx, :]}")
print(f"observation: {dgp_observations[dgp_arg_min_idx, :]}")

query point: [2.85326493 1.57328102]
observation: [-0.99975027]

We can visualise how the optimizer performed as a three-dimensional plot

from trieste.experimental.plotting import add_bo_points_plotly

fig = plot_function_plotly(
    function, search_space.lower, search_space.upper, alpha=0.5
)
fig.update_layout(height=800, width=800)

fig = add_bo_points_plotly(
    x=dgp_query_points[:, 0],
    y=dgp_query_points[:, 1],
    z=dgp_observations[:, 0],
    num_init=num_initial_points,
    idx_best=dgp_arg_min_idx,
    fig=fig,
)
fig.show()

We can visualise the model over the objective function by plotting the mean and 95% confidence intervals of its predictive distribution. Note that the DGP model is able to model the local structure of the true objective function.

import matplotlib.pyplot as plt
from trieste.experimental.plotting import (
    plot_regret,
    plot_model_predictions_plotly,
)

fig = plot_model_predictions_plotly(
    dgp_result.try_get_final_model(),
    search_space.lower,
    search_space.upper,
    num_samples=100,
)

fig = add_bo_points_plotly(
    x=dgp_query_points[:, 0],
    y=dgp_query_points[:, 1],
    z=dgp_observations[:, 0],
    num_init=num_initial_points,
    idx_best=dgp_arg_min_idx,
    fig=fig,
    figrow=1,
    figcol=1,
)
fig.update_layout(height=800, width=800)
fig.show()

We now compare to a GP model with priors over the hyperparameters. We do not expect this to do as well because GP models cannot deal with non-stationary functions well.

import gpflow
import tensorflow_probability as tfp

from trieste.models.gpflow import GaussianProcessRegression, build_gpr

gpflow_model = build_gpr(initial_data, search_space, likelihood_variance=1e-7)
gp_model = GaussianProcessRegression(gpflow_model)

bo = trieste.bayesian_optimizer.BayesianOptimizer(observer, search_space)

result = bo.optimize(
    num_steps,
    initial_data,
    gp_model,
    acquisition_rule=acquisition_rule,
)
gp_dataset = result.try_get_final_dataset()

gp_query_points = gp_dataset.query_points.numpy()
gp_observations = gp_dataset.observations.numpy()

gp_arg_min_idx = tf.squeeze(tf.argmin(gp_observations, axis=0))

print(f"query point: {gp_query_points[gp_arg_min_idx, :]}")
print(f"observation: {gp_observations[gp_arg_min_idx, :]}")

fig = plot_model_predictions_plotly(
    result.try_get_final_model(),
    search_space.lower,
    search_space.upper,
)

fig = add_bo_points_plotly(
    x=gp_query_points[:, 0],
    y=gp_query_points[:, 1],
    z=gp_observations[:, 0],
    num_init=num_initial_points,
    idx_best=gp_arg_min_idx,
    fig=fig,
    figrow=1,
    figcol=1,
)
fig.update_layout(height=800, width=800)
fig.show()

Optimization completed without errors
query point: [2.19749989 1.58411493]
observation: [-1.79361068]

We see that the DGP model does a much better job at understanding the structure of the function. The standard Gaussian process model has a large signal variance and small lengthscales, which do not result in a good model of the true objective. On the other hand, the DGP model is at least able to infer the local structure around the observations.

We can also plot the regret curves of the two models side-by-side.

gp_suboptimality = gp_observations - F_MINIMIZER.numpy()
dgp_suboptimality = dgp_observations - F_MINIMIZER.numpy()

_, ax = plt.subplots(1, 2)
plot_regret(
    dgp_suboptimality,
    ax[0],
    num_init=num_initial_points,
    idx_best=dgp_arg_min_idx,
)
plot_regret(
    gp_suboptimality,
    ax[1],
    num_init=num_initial_points,
    idx_best=gp_arg_min_idx,
)

ax[0].set_yscale("log")
ax[0].set_ylabel("Regret")
ax[0].set_ylim(0.5, 3)
ax[0].set_xlabel("# evaluations")
ax[0].set_title("DGP")

ax[1].set_title("GP")
ax[1].set_yscale("log")
ax[1].set_ylim(0.5, 3)
ax[1].set_xlabel("# evaluations")

Text(0.5, 0, '# evaluations')

We might also expect that the DGP model will do better on higher dimensional data. We explore this by testing a higher-dimensional version of the Michalewicz dataset.

Set up the problem.

function = Michalewicz5.objective
F_MINIMIZER = Michalewicz5.minimum

search_space = Michalewicz5.search_space

observer = mk_observer(function)

num_initial_points = 50
num_steps = 50
initial_query_points = search_space.sample_sobol(num_initial_points)
initial_data = observer(initial_query_points)

Build the DGP model and run the Bayes opt loop.

dgp_model = build_dgp_model(initial_data, search_space)

bo = trieste.bayesian_optimizer.BayesianOptimizer(observer, search_space)
acquisition_rule = DiscreteThompsonSampling(grid_size, 1)

dgp_result = bo.optimize(
    num_steps,
    initial_data,
    dgp_model,
    acquisition_rule=acquisition_rule,
)
dgp_dataset = dgp_result.try_get_final_dataset()

dgp_query_points = dgp_dataset.query_points.numpy()
dgp_observations = dgp_dataset.observations.numpy()

dgp_arg_min_idx = tf.squeeze(tf.argmin(dgp_observations, axis=0))

print(f"query point: {dgp_query_points[dgp_arg_min_idx, :]}")
print(f"observation: {dgp_observations[dgp_arg_min_idx, :]}")

dgp_suboptimality = dgp_observations - F_MINIMIZER.numpy()

WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7c977320> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7ca02cb0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7f025ef0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7eaaf200> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7f3ae170> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f82e68e60> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f82a9f710> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f82700dd0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f82341830> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6ffa0290> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f826a0c20> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f7e6c5dd0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6fa2c5f0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6f67fb00> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6f2c4560> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6ef4af80> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6eb8e830> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6d6f60e0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6e285ef0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6df7eb00> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6dbb4560> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6d838f80> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6df1aa70> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6f50d440> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6d05e170> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6cc6c830> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6c8b1290> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6c2bcb00> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6bef73b0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6ab7cc20> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6bab7a70> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6b7a2e60> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6b3f19e0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6b0273b0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6ad18d40> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6a81e710> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6a48def0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6986fd40> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6c752710> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f69c2d710> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f69b81b00> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f692aca70> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f67e619e0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f68f4ddd0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f68b9d950> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f687d4320> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6845ccb0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f6808a680> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f67bbbe60> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
WARNING:tensorflow:11 out of the last 11 calls to <function dgp_feature_decomposition_trajectory.__call__ at 0x7f1f678079e0> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has experimental_relax_shapes=True option that relaxes argument shapes that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.
Optimization completed without errors
query point: [2.26823028 2.69381407 1.28974228 1.22838305 0.81679683]
observation: [-2.40526686]

Repeat the above for the GP model.

gpflow_model = build_gpr(initial_data, search_space, likelihood_variance=1e-7)
gp_model = GaussianProcessRegression(gpflow_model)

bo = trieste.bayesian_optimizer.BayesianOptimizer(observer, search_space)

result = bo.optimize(
    num_steps,
    initial_data,
    gp_model,
    acquisition_rule=acquisition_rule,
)
gp_dataset = result.try_get_final_dataset()

gp_query_points = gp_dataset.query_points.numpy()
gp_observations = gp_dataset.observations.numpy()

gp_arg_min_idx = tf.squeeze(tf.argmin(gp_observations, axis=0))

print(f"query point: {gp_query_points[gp_arg_min_idx, :]}")
print(f"observation: {gp_observations[gp_arg_min_idx, :]}")

gp_suboptimality = gp_observations - F_MINIMIZER.numpy()

Optimization completed without errors
query point: [2.26823028 2.69381407 1.28974228 1.22838305 0.81679683]
observation: [-2.40526686]

Plot the regret.

_, ax = plt.subplots(1, 2)
plot_regret(
    dgp_suboptimality,
    ax[0],
    num_init=num_initial_points,
    idx_best=dgp_arg_min_idx,
)
plot_regret(
    gp_suboptimality,
    ax[1],
    num_init=num_initial_points,
    idx_best=gp_arg_min_idx,
)

ax[0].set_yscale("log")
ax[0].set_ylabel("Regret")
ax[0].set_ylim(1.5, 6)
ax[0].set_xlabel("# evaluations")
ax[0].set_title("DGP")

ax[1].set_title("GP")
ax[1].set_yscale("log")
ax[1].set_ylim(1.5, 6)
ax[1].set_xlabel("# evaluations")

Text(0.5, 0, '# evaluations')

While still far from the optimum, it is considerably better than the GP.

LICENSE

Apache License 2.0